Through Being Cool followed two years later, gaining a wider fan base and critical success among select punk markets with its greater pop sensibility. However, Saves the Day changed things up for 2001's Stay What You Are. Their third installment, and first release for Vagrant Records, Stay What You Are brought Rob Schnapf (Beck, Elliott Smith, Toadies) to the mixing boards for a more structured punk rock effort. The album sold more than 200,000 copies, landed on the Billboard charts, and produced two heavily rotated MTV2 videos for "At Your Funeral" and "Freakish." Lots of touring followed; they headlined 2001's Vagrant tour with labelmates Dashboard Confessional, and scored opening slots for Weezer and the Pop Disaster Tour with Green Day and blink-182.

In Reverie, the band's first for DreamWorks and with new drummer Pete Parada, followed two years later. Vagrant issued Ups & Downs: Early Recordings and B-Sides in August 2004, an album that contained exactly what the title states. The band re-signed with Vagrant in early 2006 and officially welcomed new bassist Manny Carrero into its ranks. Sound the Alarm followed that April, which of course meant tour dates through the rest of the year, including dates on that summer's Warped Tour. Parada made his exit in March 2007 and was replaced soon enough by ex-Classic Case/Glassjaw drummer Durijah Lang. Later that year, Saves the Day released Under the Boards, the second of their three-album concept that began with Sound the Alarm. Before they could finish the trio, Saves the Day would almost completely change their lineup, with Soloway, Lang, and Carrero leaving the band. Conley brought in bassist Rodrigo Palma, guitarist Arun Bali, and drummer Claudio Rivera to bolster the ranks, and went back into the studio in 2009 to begin work on a new album. Saves the Day shopped the completed album around and eventually signed on with Razor & Tie, and in 2011 released their seventh album, Daybreak.